CRAN Package Check Results for Maintainer ‘Klaus K. Holst <klaus at holst.it>’

Last updated on 2024-09-28 02:50:15 CEST.

Package	ERROR	NOTE	OK
lava	1		12
mets	1	8	4
targeted		4	9

Package lava

Current CRAN status: ERROR: 1, OK: 12

Additional issues

noSuggests

Version: 1.8.0
Check: examples
Result: ERROR Running examples in ‘lava-Ex.R’ failed The error most likely occurred in: > ### Name: Missing > ### Title: Missing value generator > ### Aliases: Missing Missing, Missing<- > > ### ** Examples > > library(lava) > set.seed(17) > m <- lvm(y0~x01+x02+x03) > m <- Missing(m,formula=x1~x01,Rformula=R1~0.3*x02+-0.7*x01,p=0.4) > sim(m,10) y0 x01 x02 x03 R1 x1 1 -0.3307614 1.18078924 0.6810276 -1.17756957 0 NA 2 -1.0786445 0.64319207 -0.6820334 -0.96016651 0 NA 3 -0.5398741 1.29532187 -0.7232567 -0.87895224 0 NA 4 -2.5119604 0.18791807 1.6735260 -3.55613648 1 0.1879181 5 0.3507905 1.59120510 -0.5957556 -1.41674984 0 NA 6 0.4902836 -0.05517906 1.1598438 -0.44876927 0 NA 7 1.1528003 0.83847112 0.1174224 -0.77596771 1 0.8384711 8 1.3032974 0.15937013 0.2592214 -0.83182805 0 NA 9 1.3153836 0.62595440 0.3823621 0.05183012 1 0.6259544 10 -0.3278672 0.63358473 -0.7114817 -0.61655131 0 NA > > > m <- lvm(y~1) Error in cbind(idxM, pidxM) : cannot get data pointer of 'NULL' objects Calls: lvm ... intercept<- -> intercept<-.lvm -> reindex -> mat.lvm -> cbind Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.8.0
Check: tests
Result: ERROR Running ‘test-all.R’ [41s/54s] Running the tests in ‘tests/test-all.R’ failed. Complete output: > #library("lava") > suppressPackageStartupMessages(library("testthat")) > test_check("lava") Loading required package: lava Attaching package: 'lava' The following object is masked from 'package:testthat': compare 0: 13.081250: 0.200620 0.00000 0.337259 1: 7.9524457: 0.272131 0.575626 1.15184 2: 7.4635337: 0.132261 0.763214 0.929738 3: 7.0359771: 0.0594089 0.733914 0.616824 4: 6.9865362: 0.0794124 0.756603 0.558204 5: 6.9757752: 0.0833126 0.759329 0.492413 6: 6.9738107: 0.0806668 0.756413 0.513241 7: 6.9737419: 0.0827969 0.758414 0.510545 8: 6.9737365: 0.0806693 0.757663 0.508982 9: 6.9737257: 0.0819960 0.757150 0.509933 10: 6.9737242: 0.0817930 0.757623 0.509977 11: 6.9737241: 0.0816735 0.757610 0.509971 12: 6.9737241: 0.0816798 0.757610 0.509973 [ FAIL 16 | WARN 0 | SKIP 0 | PASS 173 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-constrain.R:51:5'): Non-linear in exogenous variables ────────── Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects Backtrace: ▆ 1. └─lava::lvm(y[m] ~ 1) at test-constrain.R:51:5 2. ├─lava::`regression<-`(`*tmp*`, messages = messages, value = myvar) 3. └─lava:::`regression<-.lvm`(`*tmp*`, messages = messages, value = myvar) 4. └─lava::procformula(object, value, ...) 5. ├─lava::`intercept<-`(`*tmp*`, ys, value = char2num(xs[intpos[1]])) 6. └─lava:::`intercept<-.lvm`(`*tmp*`, ys, value = char2num(xs[intpos[1]])) 7. └─lava::reindex(object) 8. └─lava:::mat.lvm(x, res) 9. └─base::cbind(idxM, pidxM) ── Error ('test-constrain.R:66:5'): Probit constraints ───────────────────────── Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects Backtrace: ▆ 1. ├─lava::`ordinal<-`(...) at test-constrain.R:66:5 2. └─lava:::`ordinal<-.lvm`(...) 3. ├─lava::ordinal(x, value, ...) 4. └─lava:::ordinal.lvm(x, value, ...) 5. ├─lava::`intfix<-`(`*tmp*`, var[i], NULL, value = 0) 6. └─lava:::`intfix<-.lvm`(`*tmp*`, var[i], NULL, value = 0) 7. ├─lava::`intercept<-`(`*tmp*`, ..., value = value) 8. └─lava:::`intercept<-.lvm`(`*tmp*`, ..., value = value) 9. └─lava::reindex(object) 10. └─lava:::mat.lvm(x, res) 11. └─base::cbind(idxM, pidxM) ── Error ('test-constrain.R:92:3'): Multiple group constraints II ────────────── Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects Backtrace: ▆ 1. └─lava::lvm(~bw.1 + bw.2) at test-constrain.R:92:3 2. ├─lava::`regression<-`(`*tmp*`, messages = messages, value = myvar) 3. └─lava:::`regression<-.lvm`(`*tmp*`, messages = messages, value = myvar) 4. └─lava::procformula(object, value, ...) 5. ├─lava::`exogenous<-`(...) 6. └─lava:::`exogenous<-.lvm`(...) 7. └─lava::reindex(x) 8. └─lava:::mat.lvm(x, res) 9. └─base::cbind(idxM, pidxM) ── Error ('test-inference.R:47:5'): IV-estimator ─────────────────────────────── Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects Backtrace: ▆ 1. ├─lava::estimate(m, d, estimator = "iv") at test-inference.R:47:5 2. └─lava:::estimate.lvm(m, d, estimator = "iv") 3. ├─base::do.call(...) 4. └─lava:::IV_objective.lvm(x = `<lvm>`, data = `<df[,4]>`, control = `<list>`) 5. └─lava:::IV2(x, data, ...) 6. ├─lava::parfix(m, idx, p) 7. └─lava:::parfix.lvm(m, idx, p) 8. └─lava::reindex(object) 9. └─lava:::mat.lvm(x, res) 10. └─base::cbind(idxM, pidxM) ── Error ('test-inference.R:118:5'): modelsearch and GoF ─────────────────────── Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects Backtrace: ▆ 1. ├─lava::estimate(lvm(c(y1, y2) ~ 1, y1 ~ x), d) at test-inference.R:118:5 2. └─lava::lvm(c(y1, y2) ~ 1, y1 ~ x) 3. ├─lava::`regression<-`(`*tmp*`, messages = messages, value = myvar) 4. └─lava:::`regression<-.lvm`(`*tmp*`, messages = messages, value = myvar) 5. └─lava::procformula(object, value, ...) 6. ├─lava::`intercept<-`(`*tmp*`, ys, value = char2num(xs[intpos[1]])) 7. └─lava:::`intercept<-.lvm`(`*tmp*`, ys, value = char2num(xs[intpos[1]])) 8. └─lava::reindex(object) 9. └─lava:::mat.lvm(x, res) 10. └─base::cbind(idxM, pidxM) ── Error ('test-inference.R:255:5'): Prediction with missing data, random intercept ── Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects Backtrace: ▆ 1. └─lava::lvm(c(y1, y2, y3) ~ u[0]) at test-inference.R:255:5 2. ├─lava::`regression<-`(`*tmp*`, messages = messages, value = myvar) 3. └─lava:::`regression<-.lvm`(`*tmp*`, messages = messages, value = myvar) 4. └─lava::procformula(object, value, ...) 5. ├─lava::`intercept<-`(...) 6. └─lava:::`intercept<-.lvm`(...) 7. └─lava::reindex(object) 8. └─lava:::mat.lvm(x, res) 9. └─base::cbind(idxM, pidxM) ── Error ('test-inference.R:323:5'): Random slope model ──────────────────────── Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects Backtrace: ▆ 1. └─lava::lvm(c(y1[0:v], y2[0:v], y3[0:v]) ~ 1 * u) at test-inference.R:323:5 2. ├─lava::`regression<-`(`*tmp*`, messages = messages, value = myvar) 3. └─lava:::`regression<-.lvm`(`*tmp*`, messages = messages, value = myvar) 4. └─lava::procformula(object, value, ...) 5. ├─lava::`intercept<-`(...) 6. └─lava:::`intercept<-.lvm`(...) 7. └─lava::reindex(object) 8. └─lava:::mat.lvm(x, res) 9. └─base::cbind(idxM, pidxM) ── Error ('test-model.R:4:5'): Basic model building blocks ───────────────────── Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects Backtrace: ▆ 1. └─lava::lvm(y[m] ~ x) at test-model.R:4:5 2. ├─lava::`regression<-`(`*tmp*`, messages = messages, value = myvar) 3. └─lava:::`regression<-.lvm`(`*tmp*`, messages = messages, value = myvar) 4. └─lava::procformula(object, value, ...) 5. ├─lava::`intercept<-`(...) 6. └─lava:::`intercept<-.lvm`(...) 7. └─lava::reindex(object) 8. └─lava:::mat.lvm(x, res) 9. └─base::cbind(idxM, pidxM) ── Error ('test-model.R:88:5'): Graph attributes ─────────────────────────────── Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects Backtrace: ▆ 1. └─lava::graph2lvm(g1) at test-model.R:88:5 2. └─lava::lvm(graph::nodes(g), debug = debug, messages = messages) 3. ├─lava::addvar(res, myvar, messages = messages) 4. └─lava:::addvar.lvm(res, myvar, messages = messages) 5. └─lava::reindex(x) 6. └─lava:::mat.lvm(x, res) 7. └─base::cbind(idxM, pidxM) ── Error ('test-model.R:119:5'): Categorical variables ───────────────────────── Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects Backtrace: ▆ 1. └─lava::`categorical<-`(`*tmp*`, K = 3, p = c(0.1, 0.5), value = `<formula>`) at test-model.R:119:5 2. └─lava::categorical(x, value, ...) 3. ├─lava::`ordinal<-`(...) 4. └─lava:::`ordinal<-.lvm`(...) 5. ├─lava::ordinal(x, value, ...) 6. └─lava:::ordinal.lvm(x, value, ...) 7. ├─lava::`addvar<-`(`*tmp*`, value = var) 8. └─lava:::`addvar<-.lvm`(`*tmp*`, value = var) 9. ├─lava::addvar(x, var = value, ...) 10. └─lava:::addvar.lvm(x, var = value, ...) 11. └─lava::reindex(x) 12. └─lava:::mat.lvm(x, res) 13. └─base::cbind(idxM, pidxM) ── Error ('test-multigroup.R:31:3'): Missing data analysis ───────────────────── Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects Backtrace: ▆ 1. ├─lava::estimate(m, d, missing = TRUE) at test-multigroup.R:31:3 2. └─lava:::estimate.lvm(m, d, missing = TRUE) 3. └─lava:::estimate.MAR(...) 4. ├─base::subset(Model(x), exogenous(x)) 5. └─lava:::subset.lvm(Model(x), exogenous(x)) 6. └─lava::lvm(vars) 7. ├─lava::addvar(res, myvar, messages = messages) 8. └─lava:::addvar.lvm(res, myvar, messages = messages) 9. └─lava::reindex(x) 10. └─lava:::mat.lvm(x, res) 11. └─base::cbind(idxM, pidxM) ── Error ('test-multigroup.R:80:5'): Multiple group, constraints ─────────────── Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects Backtrace: ▆ 1. └─lava::lvm(y[m:v] ~ 1) at test-multigroup.R:80:5 2. ├─lava::`regression<-`(`*tmp*`, messages = messages, value = myvar) 3. └─lava:::`regression<-.lvm`(`*tmp*`, messages = messages, value = myvar) 4. └─lava::procformula(object, value, ...) 5. ├─lava::`intercept<-`(`*tmp*`, ys, value = char2num(xs[intpos[1]])) 6. └─lava:::`intercept<-.lvm`(`*tmp*`, ys, value = char2num(xs[intpos[1]])) 7. └─lava::reindex(object) 8. └─lava:::mat.lvm(x, res) 9. └─base::cbind(idxM, pidxM) ── Error ('test-sim.R:4:5'): Constrain, transform I ──────────────────────────── Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects Backtrace: ▆ 1. └─lava::lvm(, ~y + x) at test-sim.R:4:5 2. ├─lava::`regression<-`(`*tmp*`, messages = messages, value = myvar) 3. └─lava:::`regression<-.lvm`(`*tmp*`, messages = messages, value = myvar) 4. └─lava::procformula(object, value, ...) 5. ├─lava::`exogenous<-`(...) 6. └─lava:::`exogenous<-.lvm`(...) 7. └─lava::reindex(x) 8. └─lava:::mat.lvm(x, res) 9. └─base::cbind(idxM, pidxM) ── Error ('test-sim.R:22:5'): Missing ────────────────────────────────────────── Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects Backtrace: ▆ 1. └─lava::lvm(y ~ 1) at test-sim.R:22:5 2. ├─lava::`regression<-`(`*tmp*`, messages = messages, value = myvar) 3. └─lava:::`regression<-.lvm`(`*tmp*`, messages = messages, value = myvar) 4. └─lava::procformula(object, value, ...) 5. ├─lava::`intercept<-`(`*tmp*`, ys, value = char2num(xs[intpos[1]])) 6. └─lava:::`intercept<-.lvm`(`*tmp*`, ys, value = char2num(xs[intpos[1]])) 7. └─lava::reindex(object) 8. └─lava:::mat.lvm(x, res) 9. └─base::cbind(idxM, pidxM) ── Error ('test-sim.R:107:5'): distributions ─────────────────────────────────── Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects Backtrace: ▆ 1. ├─lava::`distribution<-`(`*tmp*`, ~y, TRUE, value = `<fn>`) at test-sim.R:107:5 2. └─lava:::`distribution<-.lvm`(`*tmp*`, ~y, TRUE, value = `<fn>`) 3. ├─lava::`distribution<-`(`*tmp*`, variable, mdist = TRUE, value = list(gen)) 4. └─lava:::`distribution<-.lvm`(...) 5. ├─lava::`addvar<-`(`*tmp*`, value = variable) 6. └─lava:::`addvar<-.lvm`(`*tmp*`, value = variable) 7. ├─lava::addvar(x, var = value, ...) 8. └─lava:::addvar.lvm(x, var = value, ...) 9. └─lava::reindex(x) 10. └─lava:::mat.lvm(x, res) 11. └─base::cbind(idxM, pidxM) ── Error ('test-sim.R:176:5'): eventTime ─────────────────────────────────────── Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects Backtrace: ▆ 1. └─lava::lvm(y ~ 1) at test-sim.R:176:5 2. ├─lava::`regression<-`(`*tmp*`, messages = messages, value = myvar) 3. └─lava:::`regression<-.lvm`(`*tmp*`, messages = messages, value = myvar) 4. └─lava::procformula(object, value, ...) 5. ├─lava::`intercept<-`(`*tmp*`, ys, value = char2num(xs[intpos[1]])) 6. └─lava:::`intercept<-.lvm`(`*tmp*`, ys, value = char2num(xs[intpos[1]])) 7. └─lava::reindex(object) 8. └─lava:::mat.lvm(x, res) 9. └─base::cbind(idxM, pidxM) [ FAIL 16 | WARN 0 | SKIP 0 | PASS 173 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Package mets

Current CRAN status: ERROR: 1, NOTE: 8, OK: 4

Version: 1.3.4
Check: installed package size
Result: NOTE installed size is 8.6Mb sub-directories of 1Mb or more: R 1.7Mb doc 2.8Mb libs 2.2Mb Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.3.4
Check: examples
Result: ERROR Running examples in ‘mets-Ex.R’ failed The error most likely occurred in: > ### Name: dprint > ### Title: list, head, print, tail > ### Aliases: dprint dlist dhead dtail > > ### ** Examples > > m <- lava::lvm(letters) Error in cbind(idxM, pidxM) : cannot get data pointer of 'NULL' objects Calls: <Anonymous> ... addvar -> addvar.lvm -> reindex -> mat.lvm -> cbind Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.3.4
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘basic-dutils.Rmd’ using rmarkdown --- finished re-building ‘basic-dutils.Rmd’ --- re-building ‘binomial-family.Rmd’ using rmarkdown --- finished re-building ‘binomial-family.Rmd’ --- re-building ‘binomial-twin.Rmd’ using rmarkdown --- finished re-building ‘binomial-twin.Rmd’ --- re-building ‘binreg-TRS.rmd’ using rmarkdown --- finished re-building ‘binreg-TRS.rmd’ --- re-building ‘binreg-ate.Rmd’ using rmarkdown --- finished re-building ‘binreg-ate.Rmd’ --- re-building ‘binreg.Rmd’ using rmarkdown --- finished re-building ‘binreg.Rmd’ --- re-building ‘cifreg.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/cifreg_files/figure-html/unnamed-chunk-3-1.png 686x528 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29464 bytes Input file size = 29578 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24398 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24398 Output IDAT size = 24398 bytes (5066 bytes decrease) Output file size = 24476 bytes (5102 bytes = 17.25% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/cifreg_files/figure-html/unnamed-chunk-4-1.png 686x528 pixels, 3x8 bits/pixel, RGB Input IDAT size = 17177 bytes Input file size = 17279 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13514 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13514 Output IDAT size = 13514 bytes (3663 bytes decrease) Output file size = 13592 bytes (3687 bytes = 21.34% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/cifreg_files/figure-html/unnamed-chunk-5-1.png 686x528 pixels, 3x8 bits/pixel, RGB Input IDAT size = 17762 bytes Input file size = 17864 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14313 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14313 Output IDAT size = 14313 bytes (3449 bytes decrease) Output file size = 14391 bytes (3473 bytes = 19.44% decrease) --- finished re-building ‘cifreg.Rmd’ --- re-building ‘glm-utility.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/glm-utility_files/figure-html/unnamed-chunk-3-1.png 686x528 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26142 bytes Input file size = 26256 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21135 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21135 Output IDAT size = 21135 bytes (5007 bytes decrease) Output file size = 21213 bytes (5043 bytes = 19.21% decrease) --- finished re-building ‘glm-utility.Rmd’ --- re-building ‘haplo-discrete-ttp.Rmd’ using rmarkdown --- finished re-building ‘haplo-discrete-ttp.Rmd’ --- re-building ‘interval-discrete-survival.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/interval-discrete-survival_files/figure-html/unnamed-chunk-3-1.png 686x528 pixels, 8 bits/pixel, 253 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5459 bytes Input file size = 6308 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4417 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4417 Output IDAT size = 4417 bytes (1042 bytes decrease) Output file size = 4495 bytes (1813 bytes = 28.74% decrease) --- finished re-building ‘interval-discrete-survival.Rmd’ --- re-building ‘marginal-cox.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/marginal-cox_files/figure-html/unnamed-chunk-5-1.png 357x275 pixels, 3x8 bits/pixel, RGB Input IDAT size = 9463 bytes Input file size = 9553 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7088 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7088 Output IDAT size = 7088 bytes (2375 bytes decrease) Output file size = 7166 bytes (2387 bytes = 24.99% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/marginal-cox_files/figure-html/unnamed-chunk-6-1.png 357x275 pixels, 3x8 bits/pixel, RGB Input IDAT size = 11738 bytes Input file size = 11828 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8571 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8571 Output IDAT size = 8571 bytes (3167 bytes decrease) Output file size = 8649 bytes (3179 bytes = 26.88% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/marginal-cox_files/figure-html/unnamed-chunk-9-1.png 357x275 pixels, 3x8 bits/pixel, RGB Input IDAT size = 60671 bytes Input file size = 60833 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 53840 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 53840 Output IDAT size = 53840 bytes (6831 bytes decrease) Output file size = 53918 bytes (6915 bytes = 11.37% decrease) --- finished re-building ‘marginal-cox.Rmd’ --- re-building ‘mediation-survival.Rmd’ using rmarkdown --- finished re-building ‘mediation-survival.Rmd’ --- re-building ‘quantitative-twin.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/quantitative-twin_files/figure-html/scatter1-1.png 357x275 pixels, 3x8 bits/pixel, RGB Input IDAT size = 44960 bytes Input file size = 45098 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36549 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36549 Output IDAT size = 36549 bytes (8411 bytes decrease) Output file size = 36627 bytes (8471 bytes = 18.78% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/quantitative-twin_files/figure-html/scatter2-1.png 357x275 pixels, 3x8 bits/pixel, RGB Input IDAT size = 52082 bytes Input file size = 52232 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40802 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40802 Output IDAT size = 40802 bytes (11280 bytes decrease) Output file size = 40880 bytes (11352 bytes = 21.73% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/quantitative-twin_files/figure-html/marg1-1.png 357x275 pixels, 3x8 bits/pixel, RGB Input IDAT size = 10242 bytes Input file size = 10332 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7520 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7520 Output IDAT size = 7520 bytes (2722 bytes decrease) Output file size = 7598 bytes (2734 bytes = 26.46% decrease) Quitting from lines 244-246 [lmeqmarg] (quantitative-twin.Rmd) Error: processing vignette 'quantitative-twin.Rmd' failed with diagnostics: cannot get data pointer of 'NULL' objects --- failed re-building ‘quantitative-twin.Rmd’ --- re-building ‘recurrent-events.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-4-1.png 350x275 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14723 bytes Input file size = 14813 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11911 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11911 Output IDAT size = 11911 bytes (2812 bytes decrease) Output file size = 11989 bytes (2824 bytes = 19.06% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-6-1.png 350x275 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18946 bytes Input file size = 19048 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15389 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15389 Output IDAT size = 15389 bytes (3557 bytes decrease) Output file size = 15467 bytes (3581 bytes = 18.80% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-7-1.png 350x275 pixels, 3x8 bits/pixel, RGB Input IDAT size = 15434 bytes Input file size = 15524 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12690 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12690 Output IDAT size = 12690 bytes (2744 bytes decrease) Output file size = 12768 bytes (2756 bytes = 17.75% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-8-1.png 350x275 pixels, 3x8 bits/pixel, RGB Input IDAT size = 9176 bytes Input file size = 9266 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7268 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7268 Output IDAT size = 7268 bytes (1908 bytes decrease) Output file size = 7346 bytes (1920 bytes = 20.72% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-10-1.png 350x275 pixels, 3x8 bits/pixel, RGB Input IDAT size = 11918 bytes Input file size = 12008 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9348 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9348 Output IDAT size = 9348 bytes (2570 bytes decrease) Output file size = 9426 bytes (2582 bytes = 21.50% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-13-1.png 350x275 pixels, 3x8 bits/pixel, RGB Input IDAT size = 11843 bytes Input file size = 11933 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9192 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9192 Output IDAT size = 9192 bytes (2651 bytes decrease) Output file size = 9270 bytes (2663 bytes = 22.32% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-18-1.png 350x275 pixels, 3x8 bits/pixel, RGB Input IDAT size = 11266 bytes Input file size = 11356 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9090 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9090 Output IDAT size = 9090 bytes (2176 bytes decrease) Output file size = 9168 bytes (2188 bytes = 19.27% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-19-1.png 350x275 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14034 bytes Input file size = 14124 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9564 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9564 Output IDAT size = 9564 bytes (4470 bytes decrease) Output file size = 9642 bytes (4482 bytes = 31.73% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-20-1.png 350x275 pixels, 3x8 bits/pixel, RGB Input IDAT size = 8398 bytes Input file size = 8488 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6705 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6705 Output IDAT size = 6705 bytes (1693 bytes decrease) Output file size = 6783 bytes (1705 bytes = 20.09% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-21-1.png 350x275 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26681 bytes Input file size = 26795 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18920 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18920 Output IDAT size = 18920 bytes (7761 bytes decrease) Output file size = 18998 bytes (7797 bytes = 29.10% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-22-1.png 350x275 pixels, 3x8 bits/pixel, RGB Input IDAT size = 19224 bytes Input file size = 19326 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15449 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15449 Output IDAT size = 15449 bytes (3775 bytes decrease) Output file size = 15527 bytes (3799 bytes = 19.66% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-24-1.png 350x275 pixels, 3x8 bits/pixel, RGB Input IDAT size = 12167 bytes Input file size = 12257 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9086 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9086 Output IDAT size = 9086 bytes (3081 bytes decrease) Output file size = 9164 bytes (3093 bytes = 25.23% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-25-1.png 350x275 pixels, 3x8 bits/pixel, RGB Input IDAT size = 19643 bytes Input file size = 19745 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16222 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16222 Output IDAT size = 16222 bytes (3421 bytes decrease) Output file size = 16300 bytes (3445 bytes = 17.45% decrease) --- finished re-building ‘recurrent-events.Rmd’ --- re-building ‘rmst-ate.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/rmst-ate_files/figure-html/unnamed-chunk-2-1.png 686x528 pixels, 3x8 bits/pixel, RGB Input IDAT size = 54326 bytes Input file size = 54476 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46859 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46859 Output IDAT size = 46859 bytes (7467 bytes decrease) Output file size = 46937 bytes (7539 bytes = 13.84% decrease) --- finished re-building ‘rmst-ate.Rmd’ --- re-building ‘survival-ate.Rmd’ using rmarkdown --- finished re-building ‘survival-ate.Rmd’ --- re-building ‘time-to-event-family-studies-arev.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/survival-marginal-1.png 357x275 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13904 bytes Input file size = 13994 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10347 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10347 Output IDAT size = 10347 bytes (3557 bytes decrease) Output file size = 10425 bytes (3569 bytes = 25.50% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/concordance-1.png 357x275 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14734 bytes Input file size = 14824 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11206 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11206 Output IDAT size = 11206 bytes (3528 bytes decrease) Output file size = 11284 bytes (3540 bytes = 23.88% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/unnamed-chunk-9-1.png 357x275 pixels, 8 bits/pixel, 251 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5486 bytes Input file size = 6329 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4901 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4901 Output IDAT size = 4901 bytes (585 bytes decrease) Output file size = 4979 bytes (1350 bytes = 21.33% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/concordance2-1.png 357x275 pixels, 3x8 bits/pixel, RGB Input IDAT size = 16105 bytes Input file size = 16195 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12219 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12219 Output IDAT size = 12219 bytes (3886 bytes decrease) Output file size = 12297 bytes (3898 bytes = 24.07% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/concordance3-1.png 357x275 pixels, 3x8 bits/pixel, RGB Input IDAT size = 17119 bytes Input file size = 17221 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13192 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13192 Output IDAT size = 13192 bytes (3927 bytes decrease) Output file size = 13270 bytes (3951 bytes = 22.94% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/unnamed-chunk-17-1.png 357x275 pixels, 3x8 bits/pixel, RGB Input IDAT size = 8824 bytes Input file size = 8914 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6843 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6843 Output IDAT size = 6843 bytes (1981 bytes decrease) Output file size = 6921 bytes (1993 bytes = 22.36% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/biprobittime1-1.png 357x275 pixels, 3x8 bits/pixel, RGB Input IDAT size = 12320 bytes Input file size = 12410 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9605 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9605 Output IDAT size = 9605 bytes (2715 bytes decrease) Output file size = 9683 bytes (2727 bytes = 21.97% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/unnamed-chunk-19-1.png 357x275 pixels, 3x8 bits/pixel, RGB Input IDAT size = 8465 bytes Input file size = 8555 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6375 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6375 Output IDAT size = 6375 bytes (2090 bytes decrease) Output file size = 6453 bytes (2102 bytes = 24.57% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/unnamed-chunk-19-2.png 357x275 pixels, 3x8 bits/pixel, RGB Input IDAT size = 8803 bytes Input file size = 8893 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6785 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6785 Output IDAT size = 6785 bytes (2018 bytes decrease) Output file size = 6863 bytes (2030 bytes = 22.83% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/unnamed-chunk-19-3.png 357x275 pixels, 3x8 bits/pixel, RGB Input IDAT size = 8617 bytes Input file size = 8707 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6387 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6387 Output IDAT size = 6387 bytes (2230 bytes decrease) Output file size = 6465 bytes (2242 bytes = 25.75% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/unnamed-chunk-19-4.png 357x275 pixels, 8 bits/pixel, 213 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 2376 bytes Input file size = 3105 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1985 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1985 Output IDAT size = 1985 bytes (391 bytes decrease) Output file size = 2063 bytes (1042 bytes = 33.56% decrease) --- finished re-building ‘time-to-event-family-studies-arev.Rmd’ --- re-building ‘twostage-survival.Rmd’ using rmarkdown --- finished re-building ‘twostage-survival.Rmd’ SUMMARY: processing the following file failed: ‘quantitative-twin.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Package targeted

Current CRAN status: NOTE: 4, OK: 9

Version: 0.5
Check: installed package size
Result: NOTE installed size is 15.0Mb sub-directories of 1Mb or more: doc 1.1Mb libs 13.3Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64