CRAN Package Check Results for Maintainer ‘Carl Boettiger <cboettig at gmail.com>’

Last updated on 2024-09-28 02:50:08 CEST.

Package FAIL ERROR NOTE OK
arkdb 1 1 11
codemeta 13
codemetar 3 10
contentid 13
duckdbfs 13
earthdatalogin 13
EcoNetGen 13
EML 3 10
emld 11 2
gbifdb 1 12
knitcitations 13
minioclient 13
neonstore 2 11
piggyback 1 12
pmc 13
rdflib 13
rfigshare 10 3
rfishbase 13
RNeXML 10 3
sarsop 7 6
taxadb 13
taxalight 13
treebase 13
virtuoso 13

Package arkdb

Current CRAN status: ERROR: 1, NOTE: 1, OK: 11

Version: 0.0.18
Check: tests
Result: ERROR Running ‘spelling.R’ [0s/0s] Running ‘testthat.R’ [44s/42s] Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: 6. └─arkdb::ark(...) 7. └─arkdb:::ark_file(...) 8. └─arkdb:::keep_open(...) 9. └─streamable_table$write(data, con, omit_header = TRUE, filename = counter) 10. └─arrow::write_parquet(x, sink = path, ...) 11. ├─ParquetFileWriter$create(...) 12. │ └─arrow:::parquet___arrow___ParquetFileWriter__Open(...) 13. └─ParquetWriterProperties$create(...) 14. └─arrow:::parquet___WriterProperties___Builder__create() [ FAIL 3 | WARN 8 | SKIP 8 | PASS 36 ] Error: Test failures In addition: Warning message: Connection is garbage-collected, use dbDisconnect() to avoid this. Execution halted Flavor: r-release-macos-arm64

Version: 0.0.18
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘arrow’ Flavor: r-release-macos-x86_64

Version: 0.0.18
Check: Rd cross-references
Result: NOTE Package unavailable to check Rd xrefs: ‘arrow’ Flavor: r-release-macos-x86_64

Package codemeta

Current CRAN status: OK: 13

Package codemetar

Current CRAN status: NOTE: 3, OK: 10

Version: 0.3.5
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: create_codemeta.Rd: write_json write_codemeta.Rd: write_json Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package contentid

Current CRAN status: OK: 13

Package duckdbfs

Current CRAN status: OK: 13

Package earthdatalogin

Current CRAN status: OK: 13

Package EcoNetGen

Current CRAN status: OK: 13

Package EML

Current CRAN status: NOTE: 3, OK: 10

Version: 2.0.6.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: write_eml.Rd: write_xml Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 2.0.6.1
Flags: --no-vignettes
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: write_eml.Rd: write_xml Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavor: r-devel-windows-x86_64

Package emld

Current CRAN status: NOTE: 11, OK: 2

Version: 0.5.1
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package gbifdb

Current CRAN status: ERROR: 1, OK: 12

Version: 1.0.0
Check: tests
Result: ERROR Running ‘spelling.R’ [0s/0s] Running ‘testthat.R’ [1s/1s] Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • On CRAN (1): 'test_gbifdb.R:30:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_gbifdb.R:16:3'): gbif_local() ────────────────────────────────── Error: This build of the arrow package does not support Datasets Backtrace: ▆ 1. └─gbifdb::gbif_local(path, backend = "arrow") at test_gbifdb.R:16:3 2. └─arrow::open_dataset(dir) 3. └─arrow:::stop_if_no_datasets() [ FAIL 1 | WARN 0 | SKIP 1 | PASS 2 ] Error: Test failures Execution halted Flavor: r-release-macos-arm64

Package knitcitations

Current CRAN status: OK: 13

Package minioclient

Current CRAN status: OK: 13

Package neonstore

Current CRAN status: NOTE: 2, OK: 11

Version: 0.5.1
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘rhdf5’ Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package piggyback

Current CRAN status: FAIL: 1, OK: 12

Version: 0.1.5
Check: PDF version of manual
Result: FAIL Check process probably crashed or hung up for 20 minutes ... killed Most likely this happened in the example checks (?), if not, ignore the following last lines of example output: > ### Name: pb_upload > ### Title: Upload data to an existing release > ### Aliases: pb_upload > > ### ** Examples > > ## Not run: > ##D # Needs your real token to run > ##D > ##D readr::write_tsv(mtcars,"mtcars.tsv.xz") > ##D pb_upload("mtcars.tsv.xz", "cboettig/piggyback-tests") > ## End(Not run) > > > > ### * <FOOTER> > ### > cleanEx() > options(digits = 7L) > base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n") Time elapsed: 0.65 0.01 0.67 NA NA > grDevices::dev.off() null device 1 > ### > ### Local variables: *** > ### mode: outline-minor *** > ### outline-regexp: "\\(> \\)?### [*]+" *** > ### End: *** > quit('no') ======== End of example output (where/before crash/hang up occured ?) ======== Flavor: r-release-windows-x86_64

Package pmc

Current CRAN status: OK: 13

Package rdflib

Current CRAN status: OK: 13

Package rfigshare

Current CRAN status: NOTE: 10, OK: 3

Version: 0.3.8
Check: Rd files
Result: NOTE checkRd: (-1) fs_search.Rd:76: Lost braces 76 | \\code{\link{fs_auth}} \code{\link{fs_browse}} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Package rfishbase

Current CRAN status: OK: 13

Package RNeXML

Current CRAN status: NOTE: 10, OK: 3

Version: 2.4.11
Check: Rd files
Result: NOTE checkRd: (-1) nexml_get.Rd:30: Lost braces in \itemize; meant \describe ? checkRd: (-1) nexml_get.Rd:31: Lost braces in \itemize; meant \describe ? checkRd: (-1) nexml_get.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) nexml_get.Rd:33: Lost braces in \itemize; meant \describe ? checkRd: (-1) nexml_get.Rd:34: Lost braces in \itemize; meant \describe ? checkRd: (-1) nexml_get.Rd:35: Lost braces in \itemize; meant \describe ? Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Package sarsop

Current CRAN status: NOTE: 7, OK: 6

Version: 0.6.15
Check: installed package size
Result: NOTE installed size is 6.6Mb sub-directories of 1Mb or more: bin 5.8Mb Flavors: r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package taxadb

Current CRAN status: OK: 13

Package taxalight

Current CRAN status: OK: 13

Package treebase

Current CRAN status: OK: 13

Package virtuoso

Current CRAN status: OK: 13